Ressources and tools

R Code

All R code related to our published papers (sorted by project) can be found on Github, see here:

ClostriTOF microflex Biotyper library plugin for the identification of commensal Clostridia of the human intestinal microbiota

The library plugin and all associated data can be downloaded on Zenodo under the following link:

Please cite as follows if you use it for your research: Asare PT, Lee CH, Hürlimann V, Teo Y, Cuénod A, Akduman N, Gekeler C, Afrizal A, Corthesy M, Kohout C, Thomas V, de Wouters T, Greub G, Clavel T, Pamer EG, Egli A, Maier L, Vonaesch P. A MALDI-TOF MS library for rapid identification of human commensal gut bacteria from the class Clostridia. Front Microbiol. 2023 Feb 21;14:1104707. doi: 10.3389/fmicb.2023.1104707. PMID: 36896425; PMCID: PMC9990839.