Discover essentials tools, softwares and guides to analyse your data. Click the link to download.
Tutorials & Guides
This guide covers (almost) everything for interpreting MS data for proteome quantitation. A commented version is available here.
This document help you with shotgun MS analysis & Scaffold.
For specific analyses, see the phosphoproteomic or affinity purification document.
Most journals require data sharing via public repositories. We will upload your data but need all required information first. Please complete this document and send it to us.
This manual provides insights into why the Jess Simple Western technique offers significant advantages over traditional Western blot methods. A summary is available here.
Some protocols
SILAC labeling
Secretome preparation
Gingras lab protocols for affinity purification.
Useful databases
THE reference protein database: Uniprot
Proteomics data repositery: ProteomeXchange
A comprehensive database of multiple organisms: ProteomicsDB
The most extensive PTM database: PhosphositePlus
A database of non-specific proteins in interactomics: REPRINT
A database of known & predicted protein-protein interactions: STRING
A list of more than 6’000 antibodies validated for the Jess Simple Western.
Our gel migration database for evaluating your western blot results: PUMBA
Software
Peptides & proteins identification & quantification
MaxQuant (DDA)
Spectronaut (DIA)
Proteome Discoverer (DDA)