{"id":200,"date":"2024-03-12T14:36:07","date_gmt":"2024-03-12T13:36:07","guid":{"rendered":"https:\/\/wp.unil.ch\/navarrolab\/?page_id=200"},"modified":"2026-04-15T19:23:27","modified_gmt":"2026-04-15T17:23:27","slug":"tools","status":"publish","type":"page","link":"https:\/\/wp.unil.ch\/navarrolab\/tools\/","title":{"rendered":"Tools"},"content":{"rendered":"\n<p class=\"wp-block-paragraph\"><\/p>\n\n\n\n<p class=\"wp-block-paragraph\">The software package <a href=\"https:\/\/www.dynamo-em.org\/\/w\/index.php?title=Main_Page\" target=\"_blank\" rel=\"noreferrer noopener\"><em>Dynamo<\/em><\/a> for cryo-electron tomography and subtomogram averaging<\/p>\n\n\n\n<p class=\"wp-block-paragraph\"><a href=\"https:\/\/github.com\/NavarroVettiger\/Navarro-et-al_2022\" target=\"_blank\" rel=\"noreferrer noopener\">Parametrization tools<\/a><\/p>\n\n\n\n<p class=\"wp-block-paragraph\">3D renderings and denoising <a href=\"https:\/\/github.com\/virlyananda\/EM-ImageProcessing\/tree\/main\" data-type=\"link\" data-id=\"https:\/\/github.com\/virlyananda\/EM-ImageProcessing\/tree\/main\">tools<\/a> (in collaboration with <a href=\"https:\/\/brugge.hms.harvard.edu\/people\/virly-ananda\" data-type=\"link\" data-id=\"https:\/\/brugge.hms.harvard.edu\/people\/virly-ananda\" target=\"_blank\" rel=\"noreferrer noopener\">Virly Ananda<\/a>, Harvard Medical School).<\/p>\n\n\n\n<p class=\"wp-block-paragraph\"><a href=\"https:\/\/github.com\/Aurelien-Gg\/Cryo-pip\/tree\/main\" data-type=\"link\" data-id=\"https:\/\/github.com\/Aurelien-Gg\/Cryo-pip\/tree\/main\">Aur\u00e9lien<\/a>&#8216;s computational pipelines for cryo-ET data processing and <a href=\"https:\/\/cryonav.org\/index.php\/Main_Page\" data-type=\"link\" data-id=\"https:\/\/cryonav.org\/index.php\/Main_Page\">cryoNAV<\/a>: the software platform for high-throughput data handling of large-scale datasets.<\/p>\n\n\n\n<h2 class=\"wp-block-heading\">Teaching resources<\/h2>\n\n\n\n<p class=\"wp-block-paragraph\">MLS: Introduction to cryo-electron microscopy: Subtomogram averaging <a href=\"https:\/\/github.com\/anandaV-88\/Cryo-ET\">tutorial<\/a> by <a href=\"https:\/\/wp.unil.ch\/navarrolab\/608-2\/\" data-type=\"page\" data-id=\"608\">Virly Ananda<\/a><\/p>\n\n\n\n<p class=\"wp-block-paragraph\">MLS: Introduction to cryo-electron microscopy: Pre-processing for cryo-ET <a href=\"https:\/\/aurelien-gg.github.io\/IMOD-Course\/CourseSlides.html\">tutorial<\/a> by Aur\u00e9lien Gregor.<\/p>\n\n\n\n\n\n\n\n\n\n<h2 class=\"wp-block-heading\">Cryo-EM club Lausanne!<\/h2>\n\n\n\n<p class=\"wp-block-paragraph\">click<a href=\"https:\/\/wp.unil.ch\/navarrolab\/cryo-em-club-lausanne\/\" data-type=\"page\" data-id=\"680\"> here<\/a> for more info!<\/p>\n","protected":false},"excerpt":{"rendered":"<p>The software package Dynamo for cryo-electron tomography and subtomogram averaging Parametrization tools 3D renderings and denoising tools (in collaboration with Virly Ananda, Harvard Medical School). Aur\u00e9lien&#8216;s computational pipelines for cryo-ET &hellip; <\/p>\n","protected":false},"author":1002765,"featured_media":0,"parent":0,"menu_order":0,"comment_status":"closed","ping_status":"closed","template":"","meta":{"_seopress_titles_title":"","_seopress_titles_desc":"","_seopress_robots_index":"","_seopress_robots_follow":"","_seopress_robots_imageindex":"","_seopress_robots_snippet":"","_seopress_robots_primary_cat":"","_seopress_robots_breadcrumbs":"","_seopress_robots_freeze_modified_date":"","_seopress_robots_custom_modified_date":"","_seopress_robots_canonical":"","_seopress_social_fb_title":"","_seopress_social_fb_desc":"","_seopress_social_fb_img":"","_seopress_social_fb_img_attachment_id":0,"_seopress_social_fb_img_width":0,"_seopress_social_fb_img_height":0,"_seopress_social_twitter_title":"","_seopress_social_twitter_desc":"","_seopress_social_twitter_img":"","_seopress_social_twitter_img_attachment_id":0,"_seopress_social_twitter_img_width":0,"_seopress_social_twitter_img_height":0,"_seopress_redirections_value":"","_seopress_redirections_enabled":"","_seopress_redirections_enabled_regex":"","_seopress_redirections_logged_status":"","_seopress_redirections_param":"","_seopress_redirections_type":0,"_seopress_analysis_target_kw":"","_seopress_news_disabled":"","_seopress_video_disabled":"","_seopress_video":[],"_seopress_pro_schemas_manual":[],"_seopress_pro_rich_snippets_disable_all":"","_seopress_pro_rich_snippets_disable":[],"_seopress_pro_schemas":[],"footnotes":""},"class_list":["post-200","page","type-page","status-publish"],"_links":{"self":[{"href":"https:\/\/wp.unil.ch\/navarrolab\/wp-json\/wp\/v2\/pages\/200","targetHints":{"allow":["GET"]}}],"collection":[{"href":"https:\/\/wp.unil.ch\/navarrolab\/wp-json\/wp\/v2\/pages"}],"about":[{"href":"https:\/\/wp.unil.ch\/navarrolab\/wp-json\/wp\/v2\/types\/page"}],"author":[{"embeddable":true,"href":"https:\/\/wp.unil.ch\/navarrolab\/wp-json\/wp\/v2\/users\/1002765"}],"replies":[{"embeddable":true,"href":"https:\/\/wp.unil.ch\/navarrolab\/wp-json\/wp\/v2\/comments?post=200"}],"version-history":[{"count":5,"href":"https:\/\/wp.unil.ch\/navarrolab\/wp-json\/wp\/v2\/pages\/200\/revisions"}],"predecessor-version":[{"id":691,"href":"https:\/\/wp.unil.ch\/navarrolab\/wp-json\/wp\/v2\/pages\/200\/revisions\/691"}],"wp:attachment":[{"href":"https:\/\/wp.unil.ch\/navarrolab\/wp-json\/wp\/v2\/media?parent=200"}],"curies":[{"name":"wp","href":"https:\/\/api.w.org\/{rel}","templated":true}]}}