{"id":161,"date":"2019-05-28T16:24:48","date_gmt":"2019-05-28T14:24:48","guid":{"rendered":"http:\/\/wp.unil.ch\/mial\/?page_id=161"},"modified":"2020-03-25T17:40:10","modified_gmt":"2020-03-25T16:40:10","slug":"software","status":"publish","type":"page","link":"https:\/\/wp.unil.ch\/mial\/research\/software\/","title":{"rendered":"Open data &amp; software"},"content":{"rendered":"<p>MIAL Github can be reached here &nbsp;<a href=\"https:\/\/github.com\/Medical-Image-Analysis-Laboratory\"><img alt=\"\" loading=\"lazy\" decoding=\"async\" class=\"wp-image-820 alignnone\" src=\"https:\/\/wp.unil.ch\/mial\/files\/2020\/02\/MIALgithub-150x150.png\" alt=\"\" width=\"47\" height=\"47\" srcset=\"https:\/\/wp.unil.ch\/mial\/files\/2020\/02\/MIALgithub-150x150.png 150w, https:\/\/wp.unil.ch\/mial\/files\/2020\/02\/MIALgithub-300x300.png 300w, https:\/\/wp.unil.ch\/mial\/files\/2020\/02\/MIALgithub-230x230.png 230w, https:\/\/wp.unil.ch\/mial\/files\/2020\/02\/MIALgithub-365x365.png 365w, https:\/\/wp.unil.ch\/mial\/files\/2020\/02\/MIALgithub.png 431w\" sizes=\"auto, (max-width: 47px) 100vw, 47px\" \/><\/a><\/p>\n\n\n<div class=\"wp-block-columns is-layout-flex wp-container-core-columns-is-layout-9d6595d7 wp-block-columns-is-layout-flex\">\n<div class=\"wp-block-column is-layout-flow wp-block-column-is-layout-flow\">\n\n<div class=\"su-posts su-posts-single-post \">\n\n\t\t\t\t\t\t\n\t\t\t\n\t\t\t<div id=\"su-post-887\" class=\"su-post \">\n\t\t\t\t<h1 class=\"su-post-title\">In-vivo probabilistic atlas of human thalamic nuclei<\/h1>\n\t\t\t\t<div class=\"su-post-meta\">\n\t\t\t\t\tPosted:\n\t\t\t\t\t12 February 2020\t\t\t\t\t\t\t\t\t<\/div>\n\t\t\t\t<div class=\"su-post-content\">\n\t\t\t\t\t<img alt=\"\" alt=\"\" loading=\"lazy\" decoding=\"async\" class=\"alignleft wp-image-1101 size-medium\" src=\"https:\/\/wp.unil.ch\/mial\/files\/2020\/02\/ThalamicProbAtlas2-1-300x162.png\" alt=\"\" width=\"300\" height=\"162\" srcset=\"https:\/\/wp.unil.ch\/mial\/files\/2020\/02\/ThalamicProbAtlas2-1-300x162.png 300w, https:\/\/wp.unil.ch\/mial\/files\/2020\/02\/ThalamicProbAtlas2-1.png 514w\" sizes=\"auto, (max-width: 300px) 100vw, 300px\" \/>We provide an <strong>in-vivo probabilistic atlas of human thalamic nuclei<\/strong> based on diffusion weighted magnetic resonance imaging in the MNI space. <a href=\"https:\/\/wp.unil.ch\/mial\/probabilistic-atlas-of-thalamic-nuclei\/\">Read more&#8230;<\/a>\t\t\t\t<\/div>\n\t\t\t<\/div>\n\n\t\t\t\t\n<\/div>\n\n<\/div>\n\n\n\n<div class=\"wp-block-column is-layout-flow wp-block-column-is-layout-flow\">\n\n<div class=\"su-posts su-posts-single-post \">\n\n\t\t\t\t\t\t\n\t\t\t\n\t\t\t<div id=\"su-post-865\" class=\"su-post \">\n\t\t\t\t<h1 class=\"su-post-title\">MIALSRTK: Super-resolution reconstruction of fetal MRI<\/h1>\n\t\t\t\t<div class=\"su-post-meta\">\n\t\t\t\t\tPosted:\n\t\t\t\t\t12 February 2020\t\t\t\t\t\t\t\t\t<\/div>\n\t\t\t\t<div class=\"su-post-content\">\n\t\t\t\t\t<p><img alt=\"\" alt=\"\" loading=\"lazy\" decoding=\"async\" class=\"alignleft wp-image-821 size-medium\" src=\"https:\/\/wp.unil.ch\/mial\/files\/2020\/02\/mialSRtoolkit-300x68.png\" alt=\"\" width=\"300\" height=\"68\" \/><\/p>\n<p>The <a href=\"https:\/\/wp.unil.ch\/mial\/research\/software\/mialsrtoolkit-2\/\">Medical Image Analysis Laboratory Super-resolution toolkit (MIALSR<em>TK<\/em>)<\/a>\u00a0consists of a set of C++ image processing tools necessary to perform motion-robust super-resolution foetal MRI reconstruction. <a href=\"https:\/\/wp.unil.ch\/mial\/research\/software\/mialsrtoolkit-2\/\">Read more&#8230;<\/a><\/p>\n\t\t\t\t<\/div>\n\t\t\t<\/div>\n\n\t\t\t\t\n<\/div>\n\n<\/div>\n\n\n\n<div class=\"wp-block-column is-layout-flow wp-block-column-is-layout-flow\">\n\n<div class=\"su-posts su-posts-single-post \">\n\n\t\t\t\t\t\t\n\t\t\t\n\t\t\t<div id=\"su-post-1103\" class=\"su-post \">\n\t\t\t\t<h1 class=\"su-post-title\">3T and 7T MRI brain images: targeting the Ventro-intermediate thalamic nucleus<\/h1>\n\t\t\t\t<div class=\"su-post-meta\">\n\t\t\t\t\tPosted:\n\t\t\t\t\t25 March 2020\t\t\t\t\t\t\t\t\t<\/div>\n\t\t\t\t<div class=\"su-post-content\">\n\t\t\t\t\t<p><img alt=\"\" alt=\"\" loading=\"lazy\" decoding=\"async\" class=\"alignleft wp-image-1104 size-medium\" src=\"https:\/\/wp.unil.ch\/mial\/files\/2020\/03\/DataSetVim3T7T-300x131.png\" alt=\"\" width=\"300\" height=\"131\" srcset=\"https:\/\/wp.unil.ch\/mial\/files\/2020\/03\/DataSetVim3T7T-300x131.png 300w, https:\/\/wp.unil.ch\/mial\/files\/2020\/03\/DataSetVim3T7T-768x335.png 768w, https:\/\/wp.unil.ch\/mial\/files\/2020\/03\/DataSetVim3T7T.png 1006w\" sizes=\"auto, (max-width: 300px) 100vw, 300px\" \/>We provide 3T and 7T human brain Magnetic Resonance Imaging for the automated\u00a0segmentation and functional neurosurgery targeting of the Ventro-intermediate thalamic nucleus. <a href=\"https:\/\/wp.unil.ch\/mial\/ventro-intermediate-thalamic-targeting-comparison-of-3t-and-7t-mri-based-methods\/\">Read more &#8230;<\/a><\/p>\n\t\t\t\t<\/div>\n\t\t\t<\/div>\n\n\t\t\t\t\n<\/div>\n\n<\/div>\n<\/div>\n\n\n\n<div class=\"wp-block-columns is-layout-flex wp-container-core-columns-is-layout-9d6595d7 wp-block-columns-is-layout-flex\">\n<div class=\"wp-block-column is-layout-flow wp-block-column-is-layout-flow\">\n\n<div class=\"su-posts su-posts-single-post \">\n\n\t\t\t\t\t\t\n\t\t\t\n\t\t\t<div id=\"su-post-1059\" class=\"su-post \">\n\t\t\t\t<h1 class=\"su-post-title\">MBIS: Multivariate Bayesian Image Segmentation tool<\/h1>\n\t\t\t\t<div class=\"su-post-meta\">\n\t\t\t\t\tPosted:\n\t\t\t\t\t24 March 2020\t\t\t\t\t\t\t\t\t<\/div>\n\t\t\t\t<div class=\"su-post-content\">\n\t\t\t\t\t<p><img alt=\"\" alt=\"\" loading=\"lazy\" decoding=\"async\" class=\"size-full wp-image-1080 alignleft\" src=\"https:\/\/wp.unil.ch\/mial\/files\/2020\/03\/MBIS300.png\" alt=\"\" width=\"300\" height=\"150\" \/>We present an <strong>open source multivariate statistical n-classes clustering tool<\/strong> including graph-cuts optimization with specialization to brain Magnetic Resonance imaging. <a href=\"https:\/\/wp.unil.ch\/mial\/multivariate-bayesian-image-segmentation\/\">Read more&#8230;<\/a><\/p>\n\t\t\t\t<\/div>\n\t\t\t<\/div>\n\n\t\t\t\t\n<\/div>\n\n<\/div>\n\n\n\n<div class=\"wp-block-column is-layout-flow wp-block-column-is-layout-flow\">\n\n<div class=\"su-posts su-posts-single-post \">\n\n\t\t\t\t\t\t\n\t\t\t\n\t\t\t<div id=\"su-post-1066\" class=\"su-post \">\n\t\t\t\t<h1 class=\"su-post-title\">Multi-channel MRI segmentation of eye structures and tumors<\/h1>\n\t\t\t\t<div class=\"su-post-meta\">\n\t\t\t\t\tPosted:\n\t\t\t\t\t24 March 2020\t\t\t\t\t\t\t\t\t<\/div>\n\t\t\t\t<div class=\"su-post-content\">\n\t\t\t\t\t<p><img alt=\"\" alt=\"\" loading=\"lazy\" decoding=\"async\" class=\"alignleft wp-image-1067 size-medium\" src=\"https:\/\/wp.unil.ch\/mial\/files\/2020\/03\/eyeTumorSeg-300x112.png\" alt=\"\" width=\"300\" height=\"112\" srcset=\"https:\/\/wp.unil.ch\/mial\/files\/2020\/03\/eyeTumorSeg-300x112.png 300w, https:\/\/wp.unil.ch\/mial\/files\/2020\/03\/eyeTumorSeg-1024x381.png 1024w, https:\/\/wp.unil.ch\/mial\/files\/2020\/03\/eyeTumorSeg-768x286.png 768w, https:\/\/wp.unil.ch\/mial\/files\/2020\/03\/eyeTumorSeg-1536x571.png 1536w, https:\/\/wp.unil.ch\/mial\/files\/2020\/03\/eyeTumorSeg.png 1920w\" sizes=\"auto, (max-width: 300px) 100vw, 300px\" \/><\/p>\n<p>This is an open source software\u00a0for computing the <strong>automatic segmentation of eye structures and tumors in 3D Magnetic Resonance Imaging<\/strong>. <a href=\"https:\/\/wp.unil.ch\/mial\/multi-channel-mri-segmentation-of-eye-structures-and-tumors\/\">Read more &#8230;<\/a><\/p>\n\t\t\t\t<\/div>\n\t\t\t<\/div>\n\n\t\t\t\t\n<\/div>\n\n<\/div>\n\n\n\n<div class=\"wp-block-column is-layout-flow wp-block-column-is-layout-flow\">\n\n<div class=\"su-posts su-posts-single-post \">\n\n\t\t\t\t\t\t\n\t\t\t\n\t\t\t<div id=\"su-post-1042\" class=\"su-post \">\n\t\t\t\t<h1 class=\"su-post-title\">fP-CMC: Fast Patch-based Continuous Min-Cut segmentation<\/h1>\n\t\t\t\t<div class=\"su-post-meta\">\n\t\t\t\t\tPosted:\n\t\t\t\t\t24 March 2020\t\t\t\t\t\t\t\t\t<\/div>\n\t\t\t\t<div class=\"su-post-content\">\n\t\t\t\t\t<p><img alt=\"\" alt=\"\" loading=\"lazy\" decoding=\"async\" class=\"alignleft wp-image-1043 size-medium\" src=\"https:\/\/wp.unil.ch\/mial\/files\/2020\/03\/fPCMC_scheme-300x87.png\" alt=\"\" width=\"300\" height=\"87\" srcset=\"https:\/\/wp.unil.ch\/mial\/files\/2020\/03\/fPCMC_scheme-300x87.png 300w, https:\/\/wp.unil.ch\/mial\/files\/2020\/03\/fPCMC_scheme-1024x298.png 1024w, https:\/\/wp.unil.ch\/mial\/files\/2020\/03\/fPCMC_scheme-768x223.png 768w, https:\/\/wp.unil.ch\/mial\/files\/2020\/03\/fPCMC_scheme.png 1354w\" sizes=\"auto, (max-width: 300px) 100vw, 300px\" \/><\/p>\n<p>We present a <strong>semi-supervised segmentation framework for B-mode ultrasound imaging <\/strong>based on image patches. <a href=\"https:\/\/wp.unil.ch\/mial\/fast-continuous-min-cut-segmentation\/\">Read more &#8230;<\/a><\/p>\n\t\t\t\t<\/div>\n\t\t\t<\/div>\n\n\t\t\t\t\n<\/div>\n\n<\/div>\n<\/div>\n","protected":false},"excerpt":{"rendered":"<p>MIAL Github can be reached here &nbsp;<\/p>\n","protected":false},"author":1001937,"featured_media":741,"parent":160,"menu_order":0,"comment_status":"closed","ping_status":"closed","template":"","meta":{"_seopress_robots_primary_cat":"","_seopress_titles_title":"","_seopress_titles_desc":"","_seopress_robots_index":"","footnotes":""},"class_list":["post-161","page","type-page","status-publish","has-post-thumbnail"],"_links":{"self":[{"href":"https:\/\/wp.unil.ch\/mial\/wp-json\/wp\/v2\/pages\/161","targetHints":{"allow":["GET"]}}],"collection":[{"href":"https:\/\/wp.unil.ch\/mial\/wp-json\/wp\/v2\/pages"}],"about":[{"href":"https:\/\/wp.unil.ch\/mial\/wp-json\/wp\/v2\/types\/page"}],"author":[{"embeddable":true,"href":"https:\/\/wp.unil.ch\/mial\/wp-json\/wp\/v2\/users\/1001937"}],"replies":[{"embeddable":true,"href":"https:\/\/wp.unil.ch\/mial\/wp-json\/wp\/v2\/comments?post=161"}],"version-history":[{"count":0,"href":"https:\/\/wp.unil.ch\/mial\/wp-json\/wp\/v2\/pages\/161\/revisions"}],"up":[{"embeddable":true,"href":"https:\/\/wp.unil.ch\/mial\/wp-json\/wp\/v2\/pages\/160"}],"wp:featuredmedia":[{"embeddable":true,"href":"https:\/\/wp.unil.ch\/mial\/wp-json\/wp\/v2\/media\/741"}],"wp:attachment":[{"href":"https:\/\/wp.unil.ch\/mial\/wp-json\/wp\/v2\/media?parent=161"}],"curies":[{"name":"wp","href":"https:\/\/api.w.org\/{rel}","templated":true}]}}