{"id":214,"date":"2013-06-24T16:58:12","date_gmt":"2013-06-24T14:58:12","guid":{"rendered":"http:\/\/wp.unil.ch\/geldnerlab\/?page_id=214"},"modified":"2025-10-10T10:59:25","modified_gmt":"2025-10-10T08:59:25","slug":"our-papers","status":"publish","type":"page","link":"https:\/\/wp.unil.ch\/geldnerlab\/publications\/our-papers\/","title":{"rendered":"Our Papers"},"content":{"rendered":"\n

2025<\/strong><\/p>\n\n\n\n

Huei-Hsuan\u00a0Tsai, Yuanjie\u00a0Tang,\u00a0Lingmin\u00a0Jiang,\u00a0Xiaoyan\u00a0Xu\u00a0,Val\u00e9rie\u00a0D\u00e9nervaud Tendon,\u00a0Jia\u00a0Pang\u00a0,\u00a0Yanyan\u00a0Jia,\u00a0Kathrin\u00a0Wippel,\u00a0Jordan\u00a0Vacheron\u00a0,\u00a0Christoph\u00a0Keel,\u00a0Tonni <\/a>Grube\u00a0Andersen,\u00a0Niko\u00a0Geldner, and\u00a0Feng\u00a0Zhou\u00a0Localized glutamine leakage drives the spatial structure of root microbial colonization<\/strong><\/a>, Science,<\/strong> Vol\u00a0390,\u00a0Issue\u00a06768, 2025 Oct 2<\/p>\n\n\n\n

Anaxi Houbaert,\u00a0Val\u00e9rie Denervaud Tendon,\u00a0Lukas Hoermayer,\u00a0Nicholas Morffy,\u00a0Lucia C. Strader\u00a0&\u00a0Niko Geldner.\u00a0Efficient, cell-type-specific production of flavonols by multiplexed CRISPR activation of a suite of metabolic enzymes<\/strong><\/a>, Nature Communications<\/strong>, Article\u00a0number:\u00a06559\u00a0(2025)\u00a016 July 2025<\/p>\n\n\n\n

Priya Ramakrishna, Francisco M. G\u00e1mez-Arjona, Etienne Bellani, Cristina Martin-Olmos, St\u00e9phane Escrig, Damien De Bellis, Anna De Luca, Jos\u00e9 M. Pardo, Francisco J. Quintero, Christel Genoud, Clara S\u00e1nchez-Rodriguez, Niko Geldner & Anders Meibom. Elemental cryo-imaging reveals SOS1-dependent vacuolar sodium accumulation<\/strong><\/a>, Nature<\/strong>, 2025 Jan 15<\/p>\n\n\n\n

2024<\/strong><\/p>\n\n\n\n

Yan Ma, Isabelle Fl\u00fcckiger, Jade Nicolet, Jia Pang, Joe B. Dickinson, Damien De Bellis, Aur\u00e9lia Emonet, Satoshi Fujita & Niko Geldner Comparisons of two receptor-MAPK pathways in a single cell-type reveal mechanisms of signalling specificity<\/a>.<\/strong> Nat<\/strong>. Plants<\/strong>,10, 1343\u20131362 (2024).<\/p>\n\n\n\n

Min Cao, Matthieu Pierre Platre, Huei-Hsuan Tsai, Ling Zhang, Tatsuya Nobori, Laia Armengot, Yintong Chen, Wenrong He, Lukas Brent, Nuria S. Coll, Joseph R. Ecker, Niko Geldner & Wolfgang Busch. Spatial IMA1 regulation restricts root iron acquisition on MAMP perception<\/strong>, <\/strong><\/a>Nature 625<\/strong>,750\u2013759 (2024)<\/p>\n\n\n\n

2023<\/strong><\/p>\n\n\n\n

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Barbosa ICR, De Bellis D, Fl\u00fcckiger I, Bellani E, Grang\u00e9-Guerment M, H\u00e9maty K, Geldner N.  Directed growth and fusion of membrane-wall microdomains requires CASP-mediated inhibition and displacement of secretory foci<\/a>  Nat commun. 2023 Mar 23; 14(1):1626.<\/em><\/strong><\/p>\n<\/div><\/div>\n\n\n\n

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2022<\/strong><\/p>\n\n\n\n

Kolbeck A, Marhav\u00fd P, De Bellis D, Li B, Kamiya T, Fujiwara T, Kalmbach L, Geldner N.. CASP microdomain formation requires cross cell wall stabilization of domains and non-cell autonomous action of LOTR1.  <\/a><\/strong>Elife<\/strong><\/em>.<\/strong> 2022 Jan 14. PMID: 35029147<\/p>\n\n\n\n

H\u00e9maty K, De Bellis D, Wang X, M\u00e4h\u00f6nen AP, Geldner N. Analysis of exocyst function in endodermis reveals its widespread contribution and specificity of action.  <\/a><\/strong>Plant Physiol.<\/strong><\/em> 2022 Jan 31. PMID: 35099565<\/p>\n<\/div><\/div>\n\n\n\n

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2021<\/strong><\/p>\n\n\n\n

Ursache R, Fujita S, D\u00e9nervaud Tendon V, Geldner N. Combined fluorescent seed selection and multiplex CRISPR\/Cas9 assembly for fast generation of multiple Arabidopsis mutants.  <\/a><\/strong>Plant Methods. <\/strong><\/em>.<\/strong> 2021 Oct 30. PMID: 34717688<\/p>\n\n\n\n

Ursache R, De Jesus Vieira Teixeira C, D\u00e9nervaud Tendon V, Gully K, De Bellis D, Schmid-Siegert E, Grube Andersen T, Shekhar V, Calderon S, Pradervand S, Nawrath C, Geldner N,<\/strong> Vermeer JEM. GDSL-domain proteins have key roles in suberin polymerization and degradation.  <\/a><\/strong>Nat Plants. <\/strong><\/em>.<\/strong> 2021 Mar 7. PMID: 33686223<\/p>\n\n\n\n

Emonet A, Zhou F, Vacheron J, Heiman CM, D\u00e9nervaud Tendon V, Ma KW, Schulze-Lefert P, Keel C, Geldner N<\/strong>. Spatially Restricted Immune Responses Are Required for Maintaining Root Meristematic Activity upon Detection of Bacteria.  <\/a><\/strong>Curr Biol.<\/strong><\/em>.<\/strong> 2021 Mar 8. PMID: 33508217<\/p>\n\n\n\n

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2020<\/strong><\/p>\n\n\n\n

Rojas-Murcia N, H\u00e9maty K, Lee Y, Emonet A, Ursache R, Fujita S, De Bellis D, Geldner N<\/strong>. High-order mutants reveal an essential requirement for peroxidases but not laccases in Casparian strip lignification  <\/a><\/strong>Proc Natl Acad Sci U S A<\/strong><\/em>.<\/strong> 2020 Nov 17. PMID: 33139576<\/p>\n\n\n\n

Fujita S, De Bellis D, Edel KH, K\u00f6ster P, Andersen TG, Schmid-Siegert E, D\u00e9nervaud Tendon V, Pfister A, Marhav\u00fd P, Ursache R, Doblas VG, Barberon M, Daraspe J, Creff A, Ingram G, Kudla J, Geldner N<\/strong>. SCHENGEN receptor module drives localized ROS production and lignification in plant roots.  <\/a><\/strong>Embo J. <\/strong><\/em>.<\/strong>2020 March 18. PMID:32187732<\/p>\n\n\n\n

Zhou F, Emonet A, D\u00e9nervaud Tendon V, Marhavy P, Wu D, Lahaye T, Geldner<\/strong> N<\/strong>. Co-incidence of Damage and Microbial Patterns Controls Localized Immune Responses in Roots. <\/a><\/strong> Cell<\/strong><\/em>.<\/strong> 2020 Feb 6. PMID:32032516<\/p>\n\n\n\n

Doll NM, Royek S, Fujita S, Okuda S, Chamot S, Stintzi A, Widiez T, Hothorn M, Schaller A, Geldner<\/strong> N.<\/strong>, Ingram G. A two-way molecular dialogue between embryo and endosperm is required for seed development.<\/strong>  <\/a>Science<\/strong><\/em>. 2020 Jan 24. PMID:31974252<\/p>\n\n\n\n

Okuda S, Fujita S, Moretti A, Hohmann U, Doblas VG, Ma Y, Pfister A, Brandt B, Geldner<\/strong> N.<\/strong>, Hothorn M. Molecular mechanism for the recognition of sequence-divergent CIF peptides by the plant receptor kinases GSO1\/SGN3 and GSO2. <\/a><\/strong>Proc Natl Acad Sci U S A.<\/strong><\/em> 2020 Feb 4. Epub 2020 Jan 21. PMID:31964818<\/p>\n\n\n\n

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2019<\/strong><\/p>\n\n\n\n

Holbein J, Franke RB, Marhav\u00fd P, Fujita S, G\u00f3recka M, Sobczak M, Geldner N<\/strong>, Schreiber L, Grundler FMW, Siddique S. Root endodermal barrier system contributes to defence against plant-parasitic cyst and root-knot nematodes<\/strong>. <\/a>Plant J<\/strong><\/em>.<\/strong> 2019 Oct. Epub 2019 Sep 3. PMID:31322300<\/p>\n\n\n\n

Marhav\u00fd P, Kurenda A, Siddique S, D\u00e9nervaud Tendon V, Zhou F, Holbein J, Hasan MS, Grundler FM, Farmer EE, Geldner N. Single-cell damage elicits regional, nematode-restricting ethylene responses in roots. <\/a><\/strong>EMBO J<\/strong><\/em>. 2019 May 15. Epub 2019 May 6. PMID:31061171<\/p>\n\n\n\n

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2018<\/strong><\/p>\n\n\n\n

Andersen TG, Naseer S, Ursache R, Wybouw B, Smet W, De Rybel B, Vermeer JEM, Geldner N<\/strong>. Diffusible repression of cytokinin signalling produces endodermal symmetry and passage cells.<\/a><\/strong> Nature<\/strong><\/em>. 2018 Mar 22. Epub 2018 Mar 14. PMID:29539635<\/p>\n\n\n\n

Ursache R, Andersen TG, Marhav\u00fd P, Geldner N<\/strong>. A protocol for com<\/strong><\/a>bining fluorescent proteins with histological stains for diverse cell wall components.<\/strong><\/a>Plant J<\/strong><\/em>.<\/strong> 2018 Jan. PMID:29171896<\/p>\n\n\n\n

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2017<\/strong><\/p>\n\n\n\n

Kalmbach L, H\u00e9maty K, De Bellis D, Barberon M, Fujita S, Ursache R, Daraspe J, Geldner N<\/strong>. Transient cell-specific EXO70A1 activity in the CASP domain and Casparian strip localization.<\/a><\/strong> Nat Plants<\/strong><\/em>. 2017 Apr 24.  PMID:28436943<\/p>\n\n\n\n

Doblas VG, Smakowska-Luzan E, Fujita S, Alassimone J, Barberon M, Madalinski M, Belkhadir Y, Geldner N.<\/strong> Root diffusion barrier control by a vasculature-derived peptide binding to the SGN3 receptor<\/strong>.<\/a> Science<\/strong><\/em>.<\/strong> 2017 Jan 20.  PMID:28104888<\/p>\n\n\n\n

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2016<\/strong><\/p>\n\n\n\n

Alassimone J, Fujita S, Doblas VG, van Dop M, Barberon M, Kalmbach L, Vermeer JE, Rojas-Murcia N, Santuari L, Hardtke CS, Geldner N.<\/strong> Polarly localized kinase SGN1 is required for Casparian strip integrity and positioning<\/strong>. <\/a>Nat Plants<\/strong><\/em>.<\/strong> 2016 Jul 25. PMID:27455051<\/p>\n\n\n\n

Barberon M, Vermeer JE, De Bellis D, Wang P, Naseer S, Andersen TG, Humbel BM, Nawrath C, Takano J, Salt DE and Geldner N<\/strong>. Adaptation of Root Function by Nutrient-Induced Plasticity of Endodermal Differentiation<\/strong>. <\/a>Cell<\/strong><\/em>.<\/strong> 2016 Jan 28. PMID:26777403<\/p>\n\n\n\n

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2015<\/strong><\/p>\n\n\n\n

Martins S, Dohmann EM, Cayrel A, Johnson A, Fischer W3<\/sup> Pojer F, Satiat-Jeunema\u00eetre B, Jaillais Y, Chory J, Geldner N<\/strong>, Vert G. Internalization and vacuolar targeting of the brassinosteroid hormone receptor BRI1 are regulated by ubiquitination. <\/a><\/strong> Nat Commun<\/strong><\/em>. 2015 Jan 21.PMID:25608221<\/p>\n\n\n\n

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2014<\/strong><\/p>\n\n\n\n

Pfister A, Barberon M, Alassimone J, Kalmbach L, Vermeer JE, Yamazaki M, Li G, Maurel C, Takano J, Kamiya T, Salt DE, Ropplo D, Geldner N<\/strong>. A receptor-like kinase mutant with absent endodermal diffusion barrier displays selective nutrient homeostasis defects.<\/a><\/strong> Elife<\/strong><\/em>. 2014 Sep 16.<\/p>\n\n\n\n

Vermeer JE, von Wangenheim D, Barberon M, Lee Y, Stelzer EH, Maizel A, Geldner N<\/strong>. A spatial accommodation by neighboring cells is required for organ initiation in Arabidopsis<\/strong>.<\/a>  Science<\/strong><\/em>. 2014 Jan 10.<\/p>\n\n\n\n

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2013<\/strong><\/p>\n\n\n\n

Hosmani PS, Kamiya T, Danku J, Naseer S, Geldner N<\/strong>, Guerinot ML, Salt DE. Dirigent domain-containing protein is part of the machinery required for formation of the lignin-based Casparian strip in the root. <\/a><\/strong>Proc Natl Acad Sci U S A<\/strong><\/em>. 2013 Aug. PMID: 23940370.<\/p>\n\n\n\n

Lee Y, Rubio MC, Alassimone J, Geldner N<\/strong>. A mechanism for localized lignin deposition in the endodermis.<\/strong> <\/a>Cell<\/strong><\/em>. <\/strong>2013 Apr 11. PMID: 23541512.<\/p>\n\n\n\n

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2012<\/strong><\/p>\n\n\n\n

Weimer AK, Nowack MK, Bouyer D, Zhao X, Harashima H, Naseer S, De Winter F, Dissmeyer N, Geldner N<\/strong>, Schnittger A. Retinoblastoma related1 regulates asymmetric cell divisions in Arabidopsis<\/em>.<\/a> <\/strong>Plant Cell<\/strong><\/em>. 2012 Oct;24. PMID: 23104828<\/p>\n\n\n\n

Alejandro S, Lee Y, Tohge T, Sudre D, Osorio S, Park J, Bovet L, Lee Y, Geldner N<\/strong>, Fernie AR, Martinoia E. AtABCG29 is a monolignol transporter involved in lignin biosynthesis.<\/a><\/strong> Curr Biol<\/strong><\/em>.<\/strong> 2012 Jul 10.. PMID: 22704988.<\/p>\n\n\n\n

Naseer S, Lee Y, Lapierre C, Franke R, Nawrath C, Geldner N<\/strong>.Casparian strip diffusion barrier in Arabidopsis is made of a lignin polymer without suberin<\/a>.<\/strong> Proc Natl Acad Sci U S A<\/strong><\/em>. 2012 Jun 19.. PMID: 22665765<\/p>\n\n\n\n

Lu YJ, Schornack S, Spallek T, Geldner N<\/strong>, Chory J, Schellmann S, Schumacher K, Kamoun S, Robatzek S. Patterns of plant subcellular responses to successful oomycete infections reveal differences in host cell reprogramming and endocytic trafficking.<\/a><\/strong> Cell Microbiol<\/strong><\/em>. 2012 May;14. PMID: 22233428.<\/p>\n\n\n\n

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2011<\/strong><\/p>\n\n\n\n

Richter S, M\u00fcller LM, Stierhof YD, Mayer U, Takada N, Kost B, Vieten A, Geldner N<\/strong>, Koncz C, J\u00fcrgens G. Polarized cell growth in Arabidopsis requires endosomal recycling mediated by GBF1-related ARF exchange factors.<\/a><\/strong> Nat Cell Biol.<\/strong><\/em> 2011 Dec 4. PMID: 22138577.<\/p>\n\n\n\n

Roppolo D, De Rybel B, Denervaud Tendon V, Pfister A, Alassimone J, Vermeer JE, Yamazaki M, Stierhof YD, Beeckman T, Geldner N<\/strong>. A novel protein family mediates Casparian strip formation in the endodermis. <\/a><\/strong>Nature<\/strong><\/em>. 2011 May 19. PMID: 21593871.<\/p>\n\n\n\n

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2010<\/strong><\/p>\n\n\n\n

Alassimone J, Naseer S, Geldner N<\/strong>. A developmental framework for endodermal differentiation and polarity.<\/a><\/strong> Proc Natl Acad Sci U S A<\/em><\/strong>. 2010 Mar 16.  PMID: 20142472.<\/p>\n\n\n\n

 <\/p>\n\n\n\n


2009<\/strong><\/p>\n\n\n\n

Geldner N<\/strong>, Denervaud Tendon V, Hyman DL, Mayer U, Stierhof YD, Chory J. Rapid, combinatorial analysis of membrane compartments in intact plants with a multi-color marker set.<\/a> Plant J<\/em><\/strong>.<\/strong><\/em> 2009 Jul;59(1):169-78. PMID: 19309456.<\/p>\n\n\n\n

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2008<\/strong><\/p>\n\n\n\n

Dhonukshe P, Tanaka H, Goh T, Ebine K, M\u00e4h\u00f6nen AP, Prasad K, Blilou I, Geldner N<\/strong>, Xu J, Uemura T, Chory J, Ueda T, Nakano A, Scheres B, Friml J. Generation of cell polarity in plants links endocytosis, auxin distribution and cell fate decisions.<\/a> <\/strong>Nature<\/strong><\/em>. 2008 Dec 18;456(7224):962-6. PMID: 18953331.<\/p>\n\n\n\n

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2007<\/strong><\/p>\n\n\n\n

Richter S, Geldner N<\/strong>, Schrader J, Wolters H, Stierhof YD, Rios G, Koncz C, Robinson DG, J\u00fcrgens G. Functional diversification of closely related ARF-GEFs in protein secretion and recycling<\/a>.<\/strong> Nature<\/strong><\/em>. 2007 Jul 26;448(7152):488-92. PMID: 17653190.<\/p>\n\n\n\n

Geldner N<\/strong>, Hyman DL, Wang X, Schumacher K, Chory J.  Endosomal signaling of plant steroid receptor kinase BRI1<\/a>. Genes Dev<\/em><\/strong>. <\/strong><\/em>2007 Jul 1;21(13):1598-602. 17578906.<\/p>\n","protected":false},"excerpt":{"rendered":"

2025 Huei-Hsuan\u00a0Tsai, Yuanjie\u00a0Tang,\u00a0Lingmin\u00a0Jiang,\u00a0Xiaoyan\u00a0Xu\u00a0,Val\u00e9rie\u00a0D\u00e9nervaud Tendon,\u00a0Jia\u00a0Pang\u00a0,\u00a0Yanyan\u00a0Jia,\u00a0Kathrin\u00a0Wippel,\u00a0Jordan\u00a0Vacheron\u00a0,\u00a0Christoph\u00a0Keel,\u00a0Tonni Grube\u00a0Andersen,\u00a0Niko\u00a0Geldner, and\u00a0Feng\u00a0Zhou\u00a0Localized glutamine leakage drives the spatial structure of root microbial colonization, Science, Vol\u00a0390,\u00a0Issue\u00a06768, 2025 Oct 2 Anaxi Houbaert,\u00a0Val\u00e9rie Denervaud Tendon,\u00a0Lukas Hoermayer,\u00a0Nicholas Morffy,\u00a0Lucia C. Strader\u00a0&\u00a0Niko Geldner.\u00a0Efficient, … <\/p>\n","protected":false},"author":108,"featured_media":0,"parent":22,"menu_order":1,"comment_status":"closed","ping_status":"closed","template":"","meta":{"_seopress_robots_primary_cat":"","_seopress_titles_title":"","_seopress_titles_desc":"","_seopress_robots_index":"","footnotes":""},"class_list":["post-214","page","type-page","status-publish"],"_links":{"self":[{"href":"https:\/\/wp.unil.ch\/geldnerlab\/wp-json\/wp\/v2\/pages\/214","targetHints":{"allow":["GET"]}}],"collection":[{"href":"https:\/\/wp.unil.ch\/geldnerlab\/wp-json\/wp\/v2\/pages"}],"about":[{"href":"https:\/\/wp.unil.ch\/geldnerlab\/wp-json\/wp\/v2\/types\/page"}],"author":[{"embeddable":true,"href":"https:\/\/wp.unil.ch\/geldnerlab\/wp-json\/wp\/v2\/users\/108"}],"replies":[{"embeddable":true,"href":"https:\/\/wp.unil.ch\/geldnerlab\/wp-json\/wp\/v2\/comments?post=214"}],"version-history":[{"count":4,"href":"https:\/\/wp.unil.ch\/geldnerlab\/wp-json\/wp\/v2\/pages\/214\/revisions"}],"predecessor-version":[{"id":1738,"href":"https:\/\/wp.unil.ch\/geldnerlab\/wp-json\/wp\/v2\/pages\/214\/revisions\/1738"}],"up":[{"embeddable":true,"href":"https:\/\/wp.unil.ch\/geldnerlab\/wp-json\/wp\/v2\/pages\/22"}],"wp:attachment":[{"href":"https:\/\/wp.unil.ch\/geldnerlab\/wp-json\/wp\/v2\/media?parent=214"}],"curies":[{"name":"wp","href":"https:\/\/api.w.org\/{rel}","templated":true}]}}