{"id":241,"date":"2018-10-31T17:39:24","date_gmt":"2018-10-31T16:39:24","guid":{"rendered":"http:\/\/wp.unil.ch\/egg\/?page_id=241"},"modified":"2022-08-16T14:50:18","modified_gmt":"2022-08-16T12:50:18","slug":"software","status":"publish","type":"page","link":"https:\/\/wp.unil.ch\/egg\/software\/","title":{"rendered":"Software"},"content":{"rendered":"\n<ul class=\"wp-block-list\"><li><strong><a href=\"https:\/\/github.com\/sapfo\/contaminationX\" target=\"_blank\" rel=\"noreferrer noopener\">contaminationX:<\/a><\/strong> contamination estimator based on haploid data<\/li><\/ul>\n\n\n\n<p>Website:<a href=\"https:\/\/github.com\/sapfo\/contaminationX\" target=\"_blank\" rel=\"noreferrer noopener\"> https:\/\/github.com\/sapfo\/contaminationX<\/a><br>Related publication:&nbsp;<\/p>\n\n\n\n<div class=\"csl-bib-body\">\n<div class=\"csl-entry\"><a href=\"https:\/\/doi.org\/10.1093\/bioinformatics\/btz660\">Moreno-Mayar, J.V., Korneliussen, T.S., Dalal, J., Renaud, G., Albrechtsen, A., Nielsen, R., Malaspinas, A.-S., 2020. A likelihood method for estimating present-day human contamination in ancient male samples using low-depth X-chromosome data. Bioinformatics 36, 828\u2013841.<\/a><\/div>\n\n<\/div>\n<div class=\"csl-bib-body\">\n<\/div>\n\n\n\n<ul class=\"wp-block-list\"><li><a href=\"https:\/\/github.com\/sneuensc\/mapache\" target=\"_blank\" rel=\"noreferrer noopener\"><strong>mapache<\/strong>: <\/a>a flexible pipeline to map ancient DNA<\/li><\/ul>\n\n\n\n<p>Website: <a rel=\"noreferrer noopener\" href=\"https:\/\/github.com\/sneuensc\/mapache\" target=\"_blank\">https:\/\/github.com\/sneuensc\/mapache<\/a><\/p>\n\n\n\n<figure class=\"wp-block-image size-full\"><img alt=\"\" loading=\"lazy\" decoding=\"async\" width=\"586\" height=\"375\" src=\"https:\/\/wp.unil.ch\/egg\/files\/2022\/08\/mapachelogoWEB.jpg\" alt=\"\" class=\"wp-image-279\" srcset=\"https:\/\/wp.unil.ch\/egg\/files\/2022\/08\/mapachelogoWEB.jpg 586w, https:\/\/wp.unil.ch\/egg\/files\/2022\/08\/mapachelogoWEB-300x192.jpg 300w\" sizes=\"auto, (max-width: 586px) 100vw, 586px\" \/><\/figure>\n\n\n\n<p>Related publication:&nbsp; coming soon!<\/p>\n\n\n\n<p>Authors: Samuel Neuenschwander, Diana I. Cruz D\u00e1valos, Lucas Anchieri, B\u00e1rbara Sousa da Mota, Davide Bozzi, Simone Rubinacci, Olivier Delaneau, Simon Rasmussen, and Anna-Sapfo Malaspinas <\/p>\n","protected":false},"excerpt":{"rendered":"<p>contaminationX: contamination estimator based on haploid data Website: https:\/\/github.com\/sapfo\/contaminationXRelated publication:&nbsp; Moreno-Mayar, J.V., Korneliussen, T.S., Dalal, J., Renaud, G., Albrechtsen, A., Nielsen, R., Malaspinas, A.-S., 2020. A likelihood method for estimating present-day human contamination in ancient male samples using low-depth X-chromosome<\/p>\n","protected":false},"author":1001558,"featured_media":0,"parent":0,"menu_order":0,"comment_status":"closed","ping_status":"closed","template":"","meta":{"_seopress_robots_primary_cat":"","_seopress_titles_title":"","_seopress_titles_desc":"","_seopress_robots_index":"","footnotes":""},"class_list":["post-241","page","type-page","status-publish"],"_links":{"self":[{"href":"https:\/\/wp.unil.ch\/egg\/wp-json\/wp\/v2\/pages\/241","targetHints":{"allow":["GET"]}}],"collection":[{"href":"https:\/\/wp.unil.ch\/egg\/wp-json\/wp\/v2\/pages"}],"about":[{"href":"https:\/\/wp.unil.ch\/egg\/wp-json\/wp\/v2\/types\/page"}],"author":[{"embeddable":true,"href":"https:\/\/wp.unil.ch\/egg\/wp-json\/wp\/v2\/users\/1001558"}],"replies":[{"embeddable":true,"href":"https:\/\/wp.unil.ch\/egg\/wp-json\/wp\/v2\/comments?post=241"}],"version-history":[{"count":0,"href":"https:\/\/wp.unil.ch\/egg\/wp-json\/wp\/v2\/pages\/241\/revisions"}],"wp:attachment":[{"href":"https:\/\/wp.unil.ch\/egg\/wp-json\/wp\/v2\/media?parent=241"}],"curies":[{"name":"wp","href":"https:\/\/api.w.org\/{rel}","templated":true}]}}